Class
SeedSet
Handles a set of seeds with local chaining on adding seeds.
Include Headers
seqan/seeds.h
Parameters
Specialization of the underlying seed to use. |
Metafunctions
Type for reading values. | |
Type of iterator objects that are used to traverse the container. | |
Type of an object that represents a position in a container. | |
Reference type. | |
Type of an object that is suitable to hold size information. | |
Type of the items in the container or behind an iterator. |
Functions
Adds a seed to an existing SeedSet using different algorithms for local chaining. | |
The last item in container. | |
The begin of a container. | |
Resets an object. | |
The end of a container. | |
The first item in container. | |
The number of items/characters. | |
Returns the threshold to distinguish between high-scoring and low-scoring seeds. | |
Sets the threshold at which seeds are considered high-scoring. |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de