alignment_algorithm.hpp File Reference

Provides seqan3::detail::alignment_algorithm. More...

#include <iterator>
#include <memory>
#include <optional>
#include <ranges>
#include <type_traits>
#include <seqan3/alignment/configuration/align_config_band.hpp>
#include <seqan3/alignment/configuration/align_config_scoring_scheme.hpp>
#include <seqan3/alignment/exception.hpp>
#include <seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp>
#include <seqan3/alignment/matrix/detail/trace_directions.hpp>
#include <seqan3/alignment/pairwise/align_result_selector.hpp>
#include <seqan3/alignment/pairwise/detail/concept.hpp>
#include <seqan3/alignment/pairwise/detail/type_traits.hpp>
#include <seqan3/core/detail/deferred_crtp_base.hpp>
#include <seqan3/core/detail/empty_type.hpp>
#include <seqan3/utility/container/aligned_allocator.hpp>
#include <seqan3/utility/simd/concept.hpp>
#include <seqan3/utility/simd/simd.hpp>
#include <seqan3/utility/simd/simd_traits.hpp>
#include <seqan3/utility/simd/views/to_simd.hpp>
#include <seqan3/utility/type_traits/function_traits.hpp>
#include <seqan3/utility/views/elements.hpp>

Include dependency graph for alignment_algorithm.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
	The alignment algorithm type to compute standard pairwise alignment using dynamic programming. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Detailed Description

Provides seqan3::detail::alignment_algorithm.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>