debug_stream_alignment.hpp File Reference

The seqan3::debug_stream_type overload in order to print alignments. More...

#include <iomanip>
#include <tuple>
#include <seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp>
#include <seqan3/alphabet/views/to_char.hpp>
#include <seqan3/core/debug_stream/tuple.hpp>
#include <seqan3/utility/tuple/concept.hpp>
#include <seqan3/utility/views/slice.hpp>
#include <seqan3/utility/views/zip.hpp>

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Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Functions
template<typename char_t , typename alignment_t > requires (detail::debug_streamable_tuple<alignment_t> && detail::all_model_aligned_seq<detail::tuple_type_list_t<std::remove_cvref_t<alignment_t>>>)
debug_stream_type< char_t > &	seqan3::operator<< (debug_stream_type< char_t > &stream, alignment_t &&alignment)
	Stream operator for alignments, which are represented as tuples of aligned sequences.
template<typename char_t , tuple_like alignment_t, size_t... idx>
void	seqan3::detail::stream_alignment (debug_stream_type< char_t > &stream, alignment_t const &align, std::index_sequence< idx... > const &)
	Create the formatted alignment output and add it to the provided debug_stream.

Detailed Description

The seqan3::debug_stream_type overload in order to print alignments.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>