SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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detail.hpp File Reference

Helper functions (e.g. conversions) for the structure IO submodule. More...

#include <map>
#include <ranges>
#include <stack>
#include <seqan3/alphabet/structure/concept.hpp>
#include <seqan3/io/exception.hpp>
+ Include dependency graph for io/structure_file/detail.hpp:
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Namespaces

namespace  seqan3
 The main SeqAn3 namespace.
 
namespace  seqan3::detail
 The internal SeqAn3 namespace.
 

Functions

template<typename structure_alph_type , typename bpp_type , std::ranges::range structure_type>
void seqan3::detail::bpp_from_rna_structure (bpp_type &bpp, structure_type const &structure, double weight=1.)
 Transforms a structure annotation string into a base pair probability matrix.
 

Detailed Description

Helper functions (e.g. conversions) for the structure IO submodule.

Author
Jörg Winkler <j.winkler AT fu-berlin.de>
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