seqan3::detail::alignment_configurator::select_matrix_policy< traits_t > Struct Template Reference

Transformation trait that chooses the correct matrix policy. More...

Public Types
using	type = deferred_crtp_base< alignment_matrix_policy, score_matrix_t, trace_matrix_t >
	The matrix policy based on the configurations given by config_type.

Private Types
using	score_matrix_t = std::conditional_t< traits_t::is_banded, alignment_score_matrix_one_column_banded< typename traits_t::score_type >, alignment_score_matrix_one_column< typename traits_t::score_type > >
	The selected score matrix for either banded or unbanded alignments.
using	trace_matrix_t = std::conditional_t< traits_t::is_banded, alignment_trace_matrix_full_banded< typename traits_t::trace_type, only_coordinates >, alignment_trace_matrix_full< typename traits_t::trace_type, only_coordinates > >
	The selected trace matrix for either banded or unbanded alignments.

Static Private Attributes
static constexpr bool	only_coordinates
	Indicates whether only the coordinate is required to compute the alignment.

Detailed Description

template<typename traits_t>
struct seqan3::detail::alignment_configurator::select_matrix_policy< traits_t >

Transformation trait that chooses the correct matrix policy.

Template Parameters

traits_t

The alignment configuration traits type.

Member Data Documentation

only_coordinates

template<typename traits_t >

constexpr bool seqan3::detail::alignment_configurator::select_matrix_policy< traits_t >::only_coordinates

staticconstexprprivate

Initial value:

=
            !(traits_t::compute_begin_positions || traits_t::compute_sequence_alignment)

Indicates whether only the coordinate is required to compute the alignment.

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The documentation for this struct was generated from the following file:

• alignment_configurator.hpp