seqan3::detail::alignment_score_matrix_proxy< score_type > Struct Template Reference

A proxy type for a unified access to the score matrix during alignment computation. More...

#include <seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp>

Public Attributes
score_type &	current
	The current value.
score_type &	diagonal
	The last diagonal value.
score_type &	r_left
	The last value to the left.
score_type &	up
	The last value above.
score_type &	w_left
	The next value to the left.

Detailed Description

template<typename score_type>
struct seqan3::detail::alignment_score_matrix_proxy< score_type >

A proxy type for a unified access to the score matrix during alignment computation.

Template Parameters

score_type

The type wrapped by this proxy.

Provides named accessors to the respective values of the score matrix during the alignment computation. The score_type must either model the seqan3::arithmetic or seqan3::detail::simd_conceptvector concept. In some cases the last value to the left is stored in a different location then the next left value that will be used in the subsequent column (e.g. in the banded alignment matrix). Accordingly the left value is split in a reference for reading, referred to as r_left (for reading), and a reference to the next left value on the same row, referred to as w_left (for writing).

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The documentation for this struct was generated from the following file:

• alignment_score_matrix_proxy.hpp