seqan3::detail::translation_table< nucl_type, gc, void_type > Struct Template Reference

Generic translation table for canonical genetic code. More...

#include <seqan3/alphabet/aminoacid/translation_details.hpp>

Static Public Attributes
static constexpr std::array< std::array< std::array< aa27, alphabet_size< nucl_type > >, alphabet_size< nucl_type > >, alphabet_size< nucl_type > >	value
	Holds the generic translation table.

Detailed Description

template<typename nucl_type, seqan3::genetic_code gc = seqan3::genetic_code::canonical, typename void_type = void>
struct seqan3::detail::translation_table< nucl_type, gc, void_type >

Generic translation table for canonical genetic code.

Template Parameters

nucl_type

The type of input nucleotides.

All nucleotides are casted to dna15 and the dna15 translation table is used for translation.

Member Data Documentation

value

template<typename nucl_type , seqan3::genetic_code gc = seqan3::genetic_code::canonical, typename void_type = void>

constexpr std::array<std::array<std::array<aa27, alphabet_size<nucl_type> >, alphabet_size<nucl_type> >, alphabet_size<nucl_type> > seqan3::detail::translation_table< nucl_type, gc, void_type >::value

staticconstexpr

Initial value:

{
        [] () constexpr
        {
            std::array<std::array<std::array<aa27, alphabet_size<nucl_type>>,
                                             alphabet_size<nucl_type>>, alphabet_size<nucl_type>> table{};
 
            using size_t = std::remove_const_t<decltype(alphabet_size<nucl_type>)>;
            for (size_t i = 0; i < alphabet_size<nucl_type>; ++i)
            {
                dna15 n1(assign_rank_to(i, nucl_type{}));
                for (size_t j = 0; j < alphabet_size<nucl_type>; ++j)
                {
                    dna15 n2(assign_rank_to(j, nucl_type{}));
                    for (size_t k = 0; k < alphabet_size<nucl_type>; ++k)
                    {
                        dna15 n3(assign_rank_to(k, nucl_type{}));
                        table[i][j][k] = translation_table<dna15, gc, void_type>::value[to_rank(n1)][to_rank(n2)][to_rank(n3)];
                    }
                }
            }
            return table;
        } ()
    }

Holds the generic translation table.

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The documentation for this struct was generated from the following file:

• translation_details.hpp