SeqAn3 3.1.0-rc.2
The Modern C++ library for sequence analysis.
align_config_gap_cost_affine.hpp File Reference

Provides seqan3::align_config::gap_cost_affine. More...

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Classes

struct  seqan3::align_cfg::extension_score
 A strong type of underlying type int32_t that represents the score (usually negative) of any character against a gap character. More...
 
class  seqan3::align_cfg::gap_cost_affine
 A configuration element for the affine gap cost scheme. More...
 
struct  seqan3::align_cfg::open_score
 A strong type of underlying type int32_t that represents a score (usually negative) that is incurred once per stretch of consecutive gaps. More...
 

Namespaces

namespace  seqan3
 The main SeqAn3 namespace.
 
namespace  seqan3::align_cfg
 A special sub namespace for the alignment configurations.
 

Detailed Description

Provides seqan3::align_config::gap_cost_affine.

Author
Rene Rahn <rene.rahn AT fu-berlin.de>
Jörg Winkler <j.winkler AT fu-berlin.de>
Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>
Wiep van der Toorn <w.vandertoorn AT fu-berlin.de>