SeqAn3  3.0.3
The Modern C++ library for sequence analysis.
all.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
14 #pragma once
15 
16 #include <seqan3/io/sam_file/all.hpp>
17 
18 #include <seqan3/io/alignment_file/format_bam.hpp>
19 #include <seqan3/io/alignment_file/format_sam.hpp>
20 #include <seqan3/io/alignment_file/header.hpp>
21 #include <seqan3/io/alignment_file/input.hpp>
22 #include <seqan3/io/alignment_file/input_format_concept.hpp>
23 #include <seqan3/io/alignment_file/input_options.hpp>
24 #include <seqan3/io/alignment_file/output.hpp>
25 #include <seqan3/io/alignment_file/output_format_concept.hpp>
26 #include <seqan3/io/alignment_file/output_options.hpp>
27 #include <seqan3/io/alignment_file/sam_tag_dictionary.hpp>
28 
29 SEQAN3_DEPRECATED_HEADER("This header is deprecated and will be removed in SeqAn-3.1.0 Please #include <seqan3/io/sam_file/all.hpp> instead.")
format_bam.hpp
[DEPRECATED] Provides the seqan3::format_bam.
format_sam.hpp
[DEPRECATED] Provides the seqan3::format_sam.
header.hpp
[DEPRECATED] Provides the seqan3::alignment_file_header class.
input.hpp
[DEPRECATED] Provides seqan3::sam_file_input and corresponding traits classes.
input_format_concept.hpp
[DEPRECATED] Provides seqan3::alignment_file_input_format and auxiliary classes.
input_options.hpp
[DEPRECATED] Provides seqan3::sam_file_input_options.
output_format_concept.hpp
[DEPRECATED] Provides seqan3::alignment_file_output_format and auxiliary classes.
output_options.hpp
[DEPRECATED] Provides seqan3::sam_file_output_options.
sam_tag_dictionary.hpp
[DEPRECATED] Provides the seqan3::sam_tag_dictionary class and auxiliaries.
output.hpp
[DEPRECATED] Provides seqan3::sam_file_output and corresponding traits classes.
all.hpp
Meta-include for the SAM IO submodule.
SEQAN3_DEPRECATED_HEADER
#define SEQAN3_DEPRECATED_HEADER(message)
Deprecation message for deprecated header.
Definition: platform.hpp:213