SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
all.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
180#pragma once
181
182#include <seqan3/search/configuration/default_configuration.hpp>
183#include <seqan3/search/configuration/hit.hpp>
184#include <seqan3/search/configuration/max_error.hpp>
185#include <seqan3/search/configuration/max_error_common.hpp>
186#include <seqan3/search/configuration/on_result.hpp>
187#include <seqan3/search/configuration/output.hpp>
188#include <seqan3/search/configuration/parallel.hpp>
189#include <seqan3/search/configuration/result_type.hpp>
default_configuration.hpp
Provides the default configuration for the seqan3::search() interface.
hit.hpp
Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best",...
max_error.hpp
Provides the configuration for maximum number of errors for all error types.
max_error_common.hpp
Provides the error types for maximum number of errors.
on_result.hpp
Provides seqan3::search_cfg::on_result.
parallel.hpp
Provides seqan3::search_cfg::parallel configuration.
result_type.hpp
Provides seqan3::search_cfg::detail::result_type.
output.hpp
Provides the configuration for the content of the search result.