SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
search_traits.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
14#pragma once
15
23
24namespace seqan3::detail
25{
26
32template <typename search_configuration_t>
33struct search_traits
34{
36 using empty_search_result_type = search_result<empty_type, empty_type, empty_type, empty_type>;
38 using search_result_type =
40 search_cfg::detail::result_type<empty_search_result_type>{}))
41 >::type;
42
44 static constexpr bool has_max_error_total =
45 search_configuration_t::template exists<search_cfg::max_error_total>();
47 static constexpr bool has_max_error_substitution =
48 search_configuration_t::template exists<search_cfg::max_error_substitution>();
50 static constexpr bool has_max_error_insertion =
51 search_configuration_t::template exists<search_cfg::max_error_insertion>();
53 static constexpr bool has_max_error_deletion =
54 search_configuration_t::template exists<search_cfg::max_error_deletion>();
55
57 static constexpr bool only_max_error_total = has_max_error_total &&
58 !has_max_error_substitution &&
59 !has_max_error_insertion &&
60 !has_max_error_deletion;
61
63 static constexpr bool search_all_hits = search_configuration_t::template exists<search_cfg::hit_all>();
65 static constexpr bool search_single_best_hit = search_configuration_t::template exists<search_cfg::hit_single_best>();
67 static constexpr bool search_all_best_hits = search_configuration_t::template exists<search_cfg::hit_all_best>();
69 static constexpr bool search_strata_hits = search_configuration_t::template exists<search_cfg::hit_strata>();
71 static constexpr bool has_hit_configuration = search_all_hits ||
72 search_single_best_hit ||
73 search_all_best_hits ||
74 search_strata_hits ||
75 search_configuration_t::template exists<search_cfg::hit>();
76
78 static constexpr bool output_query_id = search_configuration_t::template exists<search_cfg::output_query_id>();
80 static constexpr bool output_reference_id =
81 search_configuration_t::template exists<search_cfg::output_reference_id>();
83 static constexpr bool output_reference_begin_position =
84 search_configuration_t::template exists<search_cfg::output_reference_begin_position>();
86 static constexpr bool output_index_cursor =
87 search_configuration_t::template exists<search_cfg::output_index_cursor>();
89 static constexpr bool output_requires_locate_call = output_reference_id | output_reference_begin_position;
90
92 static constexpr bool has_output_configuration = output_query_id |
93 output_reference_id |
94 output_reference_begin_position |
95 output_index_cursor;
96
98 static constexpr bool has_user_callback = search_configuration_t::template exists<search_cfg::on_result>();
99};
100
101} // namespace seqan3::detail
Provides various type traits on generic types.
Provides seqan3::detail::empty_type.
Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best",...
Provides the configuration for maximum number of errors for all error types.
Provides seqan3::search_cfg::on_result.
Provides seqan3::search_cfg::detail::result_type.
Provides the configuration for the content of the search result.