Class
BedStream
High-level BED I/O class.
Include Headers
seqan/bed_io.h
Data Members
The names of the sequences (StringSet of CharString), updated when new sequences are seen in BED file. |
Member Functions
Constructor. |
Functions
Add the name of a sequence to a BedStream. | |
Query a BedStream for being at the end of the file. | |
Closes a BedStream | |
Flush to a BedStream | |
Query a BedStream for errors. | |
Open a BedStream. | |
Read a record from a BedStream | |
Write a record to a BedStream |
Examples
The following example demonstrates reading a BED file and printing the variant locations.
File "bed_stream_read.cpp"
1 | |
2 | |
3 | |
4 | |
5 | |
6 | |
7 | |
8 | |
9 | |
10 | |
11 | |
12 | |
13 | |
14 | |
15 | |
16 | |
17 | |
18 | |
19 | |
20 | |
21 | |
22 | |
23 | |
24 | |
25 | |
26 | |
27 | |
28 | |
29 | |
30 | |
31 | |
32 | |
33 | |
34 | |
35 | |
36 | |
37 | |
38 | |
39 | |
40 |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de