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SeqAn3
3.0.1
The Modern C++ library for sequence analysis.
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Provides the mode configuration to define the search modes "all", "all_best", "best" and "strata".
Provides seqan3::detail::configuration and utility functions.
A strong type of underlying type uint8_t or double that represents the number or rate of deletions.
Definition: max_error_common.hpp:130
Provides compatibility matrix for search configurations.
Provides the configuration for maximum number of errors for all error types.
A special sub namespace for the search configurations.
Collection of elements to configure an algorithm.
Definition: configuration.hpp:81
Provides the configuration for maximum number of errors in percent of the query length across all err...
constexpr configuration default_configuration
The default configuration.
Definition: default_configuration.hpp:28
constexpr detail::search_mode_all all
Configuration element to receive all hits within the error bounds.
Definition: mode.hpp:43
A strong type of underlying type uint8_t or double that represents the number or rate of substitution...
Definition: max_error_common.hpp:64
A strong type of underlying type uint8_t or double that represents the number or rate of total errors...
Definition: max_error_common.hpp:30
A configuration element for the maximum number of errors across all error types (mismatches,...
Definition: max_error.hpp:43
A strong type of underlying type uint8_t or double that represents the number or rate of insertions.
Definition: max_error_common.hpp:97
constexpr detail::search_output_text_position text_position
Configuration element to receive all hits within the lowest number of errors.
Definition: output.hpp:42
Provides the configuration for returning positions in the text.