A special sub namespace for the search configurations. More...

Classes
struct	deletion
	A strong type of underlying type `uint8_t` or `double` that represents the number or rate of deletions. More...

struct	insertion
	A strong type of underlying type `uint8_t` or `double` that represents the number or rate of insertions. More...

class	max_error
	A configuration element for the maximum number of errors across all error types (mismatches, insertions, deletions). This is an upper bound of errors independent from error numbers of specific error types. More...

class	max_error_rate
	A configuration element for the maximum number of errors in percent of the query length across all error types (mismatches, insertions, deletions). This is an upper bound of errors independent from error rates of specific error types. More...

struct	mode
	Configuration element to determine the search mode. More...

struct	output
	Configuration element to determine the output type of hits. More...

struct	strata
	Configuration element to receive all hits with the best number of errors plus the strata value. A strong type of underlying type `uint8_t` that represents the number or errors for strata. All hits are found with the fewest numbererrors plus 'value'. More...

struct	substitution
	A strong type of underlying type `uint8_t` or `double` that represents the number or rate of substitutions. More...

struct	total
	A strong type of underlying type `uint8_t` or `double` that represents the number or rate of total errors. More...

Typedefs
using	parallel = seqan3::detail::parallel_mode< std::integral_constant< detail::search_config_id, detail::search_config_id::parallel > >
	Enables the parallel execution of the search algorithm if possible for the given configuration. More...

Variables
constexpr detail::search_mode_all	all
	Configuration element to receive all hits within the error bounds.

constexpr detail::search_mode_all_best	all_best
	Configuration element to receive all hits within the lowest number of errors.

constexpr detail::search_mode_best	best
	Configuration element to receive one best hit (with the lowest number of errors).

constexpr configuration	default_configuration
	The default configuration. More...

constexpr detail::search_output_index_cursor	index_cursor
	Configuration element to receive all hits within the error bounds.

constexpr detail::search_output_text_position	text_position
	Configuration element to receive all hits within the lowest number of errors.

Detailed Description

A special sub namespace for the search configurations.

Classes