SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
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Class Index
A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W
A
aa10li (seqan3)
aa10murphy (seqan3)
aa20 (seqan3)
aa27 (seqan3)
algorithm_result_generator_range::algorithm_range_iterator (seqan3)
algorithm_result_generator_range (seqan3)
aligned_allocator (seqan3)
aligned_sequence (seqan3)
alignment_result (seqan3)
alphabet (seqan3)
alphabet (seqan3::custom)
alphabet< char_type > (seqan3::custom)
alphabet< uint_type > (seqan3::custom)
alphabet_base (seqan3)
alphabet_proxy (seqan3)
alphabet_tuple_base (seqan3)
alphabet_variant (seqan3)
aminoacid_alphabet (seqan3)
aminoacid_base (seqan3)
aminoacid_empty_base (seqan3)
aminoacid_scoring_scheme (seqan3)
argument_parser (seqan3)
argument_parser_compatible_option (seqan3)
argument_parser_error (seqan3)
argument_parser_meta_data (seqan3)
argument_parsing (seqan3::custom)
arithmetic (seqan3)
arithmetic_range_validator (seqan3)
B
band_fixed_size (seqan3::align_cfg)
bi_fm_index (seqan3)
bi_fm_index_cursor (seqan3)
bin_count (seqan3)
bin_index (seqan3)
bin_literal (seqan3)
bin_size (seqan3)
interleaved_bloom_filter::membership_agent::binning_bitvector (seqan3)
bitpacked_sequence (seqan3)
builtin_character (seqan3)
C
cereal_archive (seqan3)
cereal_input_archive (seqan3)
cereal_output_archive (seqan3)
cereal_text_archive (seqan3)
cerealisable (seqan3)
cigar (seqan3)
cigar_operation (seqan3::exposition_only)
concatenated_sequences (seqan3)
configuration (seqan3)
const_iterable_range (seqan3)
container (seqan3)
interleaved_bloom_filter::counting_agent_type (seqan3)
counting_vector (seqan3)
D
debug_stream_type (seqan3)
deep (seqan3::views)
design_error (seqan3)
dna15 (seqan3)
dna16sam (seqan3)
dna3bs (seqan3)
dna4 (seqan3)
dna5 (seqan3)
dot_bracket3 (seqan3)
dssp9 (seqan3)
dynamic_bitset (seqan3)
E
enum_bitwise_operators (seqan3)
error_count (seqan3::search_cfg)
error_rate (seqan3::search_cfg)
explicitly_convertible_to (seqan3)
extension_score (seqan3::align_cfg)
F
fields (seqan3)
file_open_error (seqan3)
file_validator_base (seqan3)
floating_point (seqan3)
fm_index (seqan3)
fm_index_cursor (seqan3)
format_bam (seqan3)
format_embl (seqan3)
format_error (seqan3)
format_fasta (seqan3)
format_fastq (seqan3)
format_genbank (seqan3)
format_sam (seqan3)
format_vienna (seqan3)
free_end_gaps_sequence1_leading (seqan3::align_cfg)
free_end_gaps_sequence1_trailing (seqan3::align_cfg)
free_end_gaps_sequence2_leading (seqan3::align_cfg)
free_end_gaps_sequence2_trailing (seqan3::align_cfg)
function_traits< std::function< return_t(args_t...)> > (seqan3)
G
gap (seqan3)
gap_cost_affine (seqan3::align_cfg)
gap_decorator (seqan3)
gap_decorator::gap_decorator_iterator (seqan3)
gap_erase_failure (seqan3)
H
hash< alphabet_t > (std)
hash< seqan3::dynamic_bitset< cap > > (std)
hash< urng_t > (std)
hash_function_count (seqan3)
hit (seqan3::search_cfg)
hit_all (seqan3::search_cfg)
hit_all_best (seqan3::search_cfg)
hit_single_best (seqan3::search_cfg)
hit_strata (seqan3::search_cfg)
I
implicitly_convertible_to (seqan3)
input_directory_validator (seqan3)
input_file_validator (seqan3)
input_stream_over (seqan3)
interleaved_bloom_filter (seqan3)
invalid_alignment_configuration (seqan3)
invalid_char_assignment (seqan3)
io_error (seqan3)
is_constexpr_default_constructible (seqan3)
L
lower_diagonal (seqan3::align_cfg)
M
mask (seqan3)
masked (seqan3)
match_score (seqan3)
max_error_deletion (seqan3::search_cfg)
max_error_insertion (seqan3::search_cfg)
max_error_substitution (seqan3::search_cfg)
max_error_total (seqan3::search_cfg)
interleaved_bloom_filter::membership_agent (seqan3)
method_global (seqan3::align_cfg)
method_local (seqan3::align_cfg)
min_score (seqan3::align_cfg)
mismatch_score (seqan3)
N
named_enumeration (seqan3)
nucleotide_alphabet (seqan3)
nucleotide_base (seqan3)
nucleotide_scoring_scheme (seqan3)
O
on_result (seqan3::search_cfg)
on_result (seqan3::align_cfg)
open_score (seqan3::align_cfg)
option_declared_multiple_times (seqan3)
output_alignment (seqan3::align_cfg)
output_begin_position (seqan3::align_cfg)
output_directory_validator (seqan3)
output_end_position (seqan3::align_cfg)
output_file_validator (seqan3)
output_index_cursor (seqan3::search_cfg)
output_query_id (seqan3::search_cfg)
output_reference_begin_position (seqan3::search_cfg)
output_reference_id (seqan3::search_cfg)
output_score (seqan3::align_cfg)
output_sequence1_id (seqan3::align_cfg)
output_sequence2_id (seqan3::align_cfg)
output_stream_over (seqan3)
P
pair_like (seqan3)
parse_error (seqan3)
phred42 (seqan3)
phred63 (seqan3)
phred68solexa (seqan3)
phred94 (seqan3)
phred_base (seqan3)
pipeable_config_element (seqan3)
pod_tuple (seqan3)
pod_tuple< type0 > (seqan3)
pod_tuple< type0, types... > (seqan3)
sam_file_header::program_info_t (seqan3)
pseudo_random_access_iterator (seqan3)
pseudo_random_access_range (seqan3)
Q
qualified (seqan3)
quality_alphabet (seqan3)
R
random_access_container (seqan3)
range_innermost_value (seqan3)
aligned_allocator::rebind (seqan3)
record (seqan3)
ref_info_not_given (seqan3)
regex_validator (seqan3)
remove_rvalue_reference (seqan3)
required_option_missing (seqan3)
reservible_container (seqan3)
rna15 (seqan3)
rna4 (seqan3)
rna5 (seqan3)
rna_structure_alphabet (seqan3)
S
sam_file_header (seqan3)
sam_file_input (seqan3)
sam_file_input_default_traits (seqan3)
sam_file_input_format (seqan3)
sam_file_input_options (seqan3)
sam_file_input_traits (seqan3)
sam_file_output (seqan3)
sam_file_output_format (seqan3)
sam_file_output_options (seqan3)
sam_record (seqan3)
sam_tag_dictionary (seqan3)
sam_tag_type (seqan3)
score_type (seqan3::align_cfg)
scoring_scheme (seqan3::align_cfg)
scoring_scheme_base (seqan3)
scoring_scheme_for (seqan3)
search_result (seqan3)
seed (seqan3)
semialphabet (seqan3)
semialphabet_any (seqan3)
sequence (seqan3)
sequence_container (seqan3)
sequence_file_input (seqan3)
sequence_file_input_default_traits_aa (seqan3)
sequence_file_input_default_traits_dna (seqan3)
sequence_file_input_format (seqan3)
sequence_file_input_options (seqan3)
sequence_file_input_traits (seqan3)
sequence_file_output (seqan3)
sequence_file_output_format (seqan3)
sequence_file_output_options (seqan3)
sequence_record (seqan3)
shape (seqan3)
small_string (seqan3)
small_vector (seqan3)
standard_layout (seqan3)
structure_file_input (seqan3)
structure_file_input_default_traits_aa (seqan3)
structure_file_input_default_traits_rna (seqan3)
structure_file_input_format (seqan3)
structure_file_input_options (seqan3)
structure_file_input_traits (seqan3)
structure_file_output (seqan3)
structure_file_output_format (seqan3)
structure_file_output_options (seqan3)
structure_record (seqan3)
structured_aa (seqan3)
structured_rna (seqan3)
suffix_array_interval (seqan3)
T
too_few_arguments (seqan3)
too_many_arguments (seqan3)
transformation_trait (seqan3)
trivial (seqan3)
trivially_copyable (seqan3)
trivially_destructible (seqan3)
tuple_element< elem_no, seqan3::record< field_types, field_ids > > (std)
tuple_element< elem_no, seqan3::sam_record< field_types, field_ids > > (std)
tuple_element< elem_no, seqan3::sequence_record< field_types, field_ids > > (std)
tuple_element< elem_no, seqan3::structure_record< field_types, field_ids > > (std)
tuple_element< i, t< types... > > (std)
tuple_element< i, tuple_t > (std)
tuple_like (seqan3)
tuple_size< seqan3::record< field_types, field_ids > > (std)
tuple_size< seqan3::sam_record< field_types, field_ids > > (std)
tuple_size< seqan3::sequence_record< field_types, field_ids > > (std)
tuple_size< seqan3::structure_record< field_types, field_ids > > (std)
tuple_size< t< types... > > (std)
tuple_size< tuple_t > (std)
type_list (seqan3)
U
unary_type_trait (seqan3)
unexpected_end_of_input (seqan3)
ungapped (seqan3)
unhandled_extension_error (seqan3)
unknown_option (seqan3)
upper_diagonal (seqan3::align_cfg)
user_input_error (seqan3)
V
validation_error (seqan3)
validator (seqan3)
value_list_validator (seqan3)
vectorised (seqan3::align_cfg)
W
weakly_assignable_from (seqan3)
window_size (seqan3)
writable_aligned_sequence (seqan3)
writable_alphabet (seqan3)
writable_quality_alphabet (seqan3)
writable_semialphabet (seqan3)
wuss (seqan3)