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(Note that these are not member functions.)
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You can expect these functions on all types that model seqan3::writable_aligned_sequence.
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std::ranges::iterator_t< aligned_seq_t > | insert_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator pos_it) |
| Insert a seqan3::gap into an aligned sequence. More...
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std::ranges::iterator_t< aligned_seq_t > | insert_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator pos_it, typename aligned_seq_t::size_type size) |
| Insert multiple seqan3::gap into an aligned sequence. More...
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std::ranges::iterator_t< aligned_seq_t > | erase_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator pos_it) |
| Erase a seqan3::gap from an aligned sequence. More...
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std::ranges::iterator_t< aligned_seq_t > | erase_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator first, typename aligned_seq_t::const_iterator last) |
| Erase multiple seqan3::gap from an aligned sequence. More...
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void | assign_unaligned (aligned_seq_t &aligned_seq, unaligned_sequence_type &&unaligned_seq) |
| Assign an ungapped sequence to a gapped sequence. More...
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Enables containers to model seqan3::writable_aligned_sequence if they model seqan3::sequence_container and have a value type of the seqan3::gapped alphabet.
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template<sequence_container aligned_seq_t> |
aligned_seq_t::iterator | insert_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator pos_it) |
| An implementation of seqan3::writable_aligned_sequence::insert_gap for sequence containers. More...
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template<sequence_container aligned_seq_t> |
aligned_seq_t::iterator | insert_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator pos_it, typename aligned_seq_t::size_type size) |
| An implementation of seqan3::writable_aligned_sequence::insert_gap for sequence containers. More...
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template<sequence_container aligned_seq_t> |
aligned_seq_t::iterator | erase_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator pos_it) |
| An implementation of seqan3::writable_aligned_sequence::erase_gap for sequence containers. More...
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template<sequence_container aligned_seq_t> |
aligned_seq_t::iterator | erase_gap (aligned_seq_t &aligned_seq, typename aligned_seq_t::const_iterator first, typename aligned_seq_t::const_iterator last) |
| An implementation of seqan3::writable_aligned_sequence::erase_gap for sequence containers. More...
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template<sequence_container aligned_seq_t, std::ranges::forward_range unaligned_sequence_type> |
void | assign_unaligned (aligned_seq_t &aligned_seq, unaligned_sequence_type &&unaligned_seq) |
| An implementation of seqan3::writable_aligned_sequence::assign_unaligned_sequence for sequence containers. More...
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Enables ranges to model seqan3::aligned_sequence if they have the member functions insert_gap() and erase_gap().
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template<typename range_type > |
std::ranges::iterator_t< range_type > | insert_gap (range_type &rng, std::ranges::iterator_t< range_type > const pos_it, typename range_type::size_type const size=1) |
| An implementation of seqan3::writable_aligned_sequence::insert_gap for ranges with the corresponding member function insert_gap(it, size). More...
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template<typename range_type > |
std::ranges::iterator_t< range_type > | erase_gap (range_type &rng, std::ranges::iterator_t< range_type > const pos_it) |
| An implementation of seqan3::writable_aligned_sequence::erase_gap for ranges with the corresponding member function erase_gap(it). More...
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template<typename range_type > |
std::ranges::iterator_t< range_type > | erase_gap (range_type &rng, std::ranges::iterator_t< range_type > const first, std::ranges::iterator_t< range_type > const last) |
| An implementation of seqan3::writable_aligned_sequence::erase_gap for ranges with the corresponding member function erase_gap(first, last). More...
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