alphabet/structure/concept.hpp File Reference

Provides seqan3::rna_structure_alphabet. More...

#include <concepts>
#include <optional>
#include <type_traits>
#include <seqan3/alphabet/concept.hpp>
#include <seqan3/core/detail/customisation_point.hpp>

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Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Variables
constexpr auto	seqan3::is_pair_close = detail::adl_only::is_pair_close_cpo{}
	Check whether the given character represents a leftward interaction in an RNA structure.
constexpr auto	seqan3::is_pair_open = detail::adl_only::is_pair_open_cpo{}
	Check whether the given character represents a rightward interaction in an RNA structure.
constexpr auto	seqan3::is_unpaired = detail::adl_only::is_unpaired_cpo{}
	Check whether the given character represents an unpaired nucleotide in an RNA structure.
template<typename alph_t >
constexpr auto	seqan3::max_pseudoknot_depth = detail::adl_only::max_pseudoknot_depth_cpo<alph_t>{}()
	A type trait that holds the ability of the structure alphabet to represent pseudoknots, i.e. crossing interactions, up to a certain depth.
constexpr auto	seqan3::pseudoknot_id = detail::adl_only::pseudoknot_id_cpo{}
	Retrieve an id for the level of a pseudoknotted interaction (also known as 'page number').

Detailed Descriptionno-api

Provides seqan3::rna_structure_alphabet.

Author

Joerg Winkler <j.winkler AT fu-berlin.de>