io/sam_file/output.hpp File Reference

Provides seqan3::sam_file_output and corresponding traits classes. More...

#include <cassert>
#include <filesystem>
#include <fstream>
#include <ranges>
#include <string>
#include <string_view>
#include <variant>
#include <vector>
#include <seqan3/io/detail/misc_output.hpp>
#include <seqan3/io/detail/out_file_iterator.hpp>
#include <seqan3/io/detail/record.hpp>
#include <seqan3/io/detail/record_like.hpp>
#include <seqan3/io/exception.hpp>
#include <seqan3/io/record.hpp>
#include <seqan3/io/sam_file/format_bam.hpp>
#include <seqan3/io/sam_file/format_sam.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/output_format_concept.hpp>
#include <seqan3/io/sam_file/output_options.hpp>
#include <seqan3/io/sam_file/sam_flag.hpp>
#include <seqan3/io/stream/concept.hpp>
#include <seqan3/utility/tuple/concept.hpp>
#include <seqan3/utility/type_list/traits.hpp>

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Classes
class	seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
	A class for writing SAM files, both SAM and its binary representation BAM are supported. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Detailed Descriptionno-api

Provides seqan3::sam_file_output and corresponding traits classes.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>