seqan3::cigar_clipped_bases Struct Reference

Helper struct to specialise soft and hard clipping when using seqan3::cigar_from_alignment. More...

#include <seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp>

Public Attributes
uint32_t	hard_back {}
	The number of hard clipped bases at the back of the CIGAR string.
uint32_t	hard_front {}
	The number of hard clipped bases at the front of the CIGAR string.
uint32_t	soft_back {}
	The number of soft clipped bases at the back of the CIGAR string.
uint32_t	soft_front {}
	The number of soft clipped bases at the front of the CIGAR string.

Detailed Descriptionno-api

Helper struct to specialise soft and hard clipping when using seqan3::cigar_from_alignment.

A CIGAR string might have hard or soft clipping at the front or back, e.g., 2H3S100M3S2H.

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The documentation for this struct was generated from the following file:

• cigar_from_alignment.hpp