align_config_gap_cost_affine.hpp File Reference

Provides seqan3::align_config::gap_cost_affine. More...

#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/core/configuration/pipeable_config_element.hpp>
#include <seqan3/core/detail/strong_type.hpp>

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Classes
struct	seqan3::align_cfg::extension_score
	A strong type of underlying type int32_t that represents the score (usually negative) of any character against a gap character. More...
class	seqan3::align_cfg::gap_cost_affine
	A configuration element for the affine gap cost scheme. More...
struct	seqan3::align_cfg::open_score
	A strong type of underlying type int32_t that represents a score (usually negative) that is incurred once per stretch of consecutive gaps. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::align_cfg
	A special sub namespace for the alignment configurations.

Detailed Description

Provides seqan3::align_config::gap_cost_affine.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>

Jörg Winkler <j.winkler AT fu-berlin.de>

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>

Wiep van der Toorn <w.vandertoorn AT fu-berlin.de>