align_config_method.hpp File Reference

Provides global and local alignment configurations. More...

#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/core/configuration/pipeable_config_element.hpp>
#include <seqan3/core/detail/empty_type.hpp>
#include <seqan3/core/detail/strong_type.hpp>

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Classes
struct	seqan3::align_cfg::free_end_gaps_sequence1_leading
	A strong type representing free_end_gaps_sequence1_leading of the seqan3::align_cfg::method_global. More...
struct	seqan3::align_cfg::free_end_gaps_sequence1_trailing
	A strong type representing free_end_gaps_sequence1_trailing of the seqan3::align_cfg::method_global. More...
struct	seqan3::align_cfg::free_end_gaps_sequence2_leading
	A strong type representing free_end_gaps_sequence2_leading of the seqan3::align_cfg::method_global. More...
struct	seqan3::align_cfg::free_end_gaps_sequence2_trailing
	A strong type representing free_end_gaps_sequence2_trailing of the seqan3::align_cfg::method_global. More...
class	seqan3::align_cfg::method_global
	Sets the global alignment method. More...
class	seqan3::align_cfg::method_local
	Sets the local alignment method. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::align_cfg
	A special sub namespace for the alignment configurations.

Detailed Description

Provides global and local alignment configurations.

Author

Joshua Kim <joshua.kim AT fu-berlin.de>

Rene Rahn <rene.rahn AT fu-berlin.de>

Jörg Winkler <j.winkler AT fu-berlin.de>

Wiep van der Toorn <w.vandertoorn AT fu-berlin.de>

Lydia Buntrock <lydia.buntrock AT fu-berlin.de>