align_pairwise.hpp File Reference

Provides pairwise alignment function. More...

#include <concepts>
#include <functional>
#include <iostream>
#include <ranges>
#include <tuple>
#include <type_traits>
#include <seqan3/alignment/pairwise/alignment_configurator.hpp>
#include <seqan3/alignment/pairwise/alignment_result.hpp>
#include <seqan3/alignment/pairwise/detail/concept.hpp>
#include <seqan3/alignment/pairwise/detail/type_traits.hpp>
#include <seqan3/core/algorithm/algorithm_result_generator_range.hpp>
#include <seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp>
#include <seqan3/utility/simd/simd.hpp>
#include <seqan3/utility/simd/simd_traits.hpp>
#include <seqan3/utility/type_traits/basic.hpp>

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Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Functions
template<typename sequence_t , typename alignment_config_t > requires detail::align_pairwise_single_input<sequence_t> && std::copy_constructible<std::remove_reference_t<sequence_t>> && detail::is_type_specialisation_of_v<alignment_config_t, configuration>
constexpr auto	seqan3::align_pairwise (sequence_t &&seq, alignment_config_t const &config)
	Computes the pairwise alignment for a pair of sequences or a range over sequence pairs.

Detailed Description

Provides pairwise alignment function.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>