edit_distance_trace_matrix_full.hpp File Reference

Provides seqan3::detail::edit_distance_trace_matrix_full. More...

#include <bitset>
#include <seqan3/alignment/matrix/detail/trace_directions.hpp>
#include <seqan3/alignment/pairwise/edit_distance_fwd.hpp>
#include <seqan3/utility/detail/bits_of.hpp>

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Classes
struct	seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::column_type
	The state of one computation step. More...
class	seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >
	The underlying data structure of seqan3::detail::edit_distance_unbanded that represents the trace matrix. More...
struct	seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::max_errors_state
	If use_max_errors is true store these additional state information in state_type. More...
struct	seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::trace_matrix_state
	This information is needed to infer the trace matrix. More...
struct	seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::trace_path_iterator
	The iterator needed to implement seqan3::detail::edit_distance_trace_matrix_full::trace_path. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Detailed Description

Provides seqan3::detail::edit_distance_trace_matrix_full.

Author

Marcel Ehrhardt <marcel.ehrhardt AT fu-berlin.de>