minimiser.hpp File Reference

Provides seqan3::views::minimiser. More...

#include <algorithm>
#include <deque>
#include <seqan3/core/detail/empty_type.hpp>
#include <seqan3/core/range/detail/adaptor_from_functor.hpp>
#include <seqan3/core/range/type_traits.hpp>
#include <seqan3/utility/range/concept.hpp>
#include <seqan3/utility/type_traits/lazy_conditional.hpp>

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Classes
class	seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >
	Iterator for calculating minimisers. More...
struct	seqan3::detail::minimiser_fn
	seqan3::views::minimiser's range adaptor object type (non-closure). More...
class	seqan3::detail::minimiser_view< urng1_t, urng2_t >
	The type returned by seqan3::views::minimiser. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.
namespace	seqan3::views
	The SeqAn namespace for views.

Functions
template<std::ranges::viewable_range rng1_t, std::ranges::viewable_range rng2_t>
	seqan3::detail::minimiser_view (rng1_t &&, rng2_t &&, size_t const window_size) -> minimiser_view< std::views::all_t< rng1_t >, std::views::all_t< rng2_t > >
	A deduction guide for the view class template.
template<std::ranges::viewable_range rng1_t>
	seqan3::detail::minimiser_view (rng1_t &&, size_t const window_size) -> minimiser_view< std::views::all_t< rng1_t > >
	A deduction guide for the view class template.

Variables
constexpr auto	seqan3::views::minimiser
	Computes minimisers for a range of comparable values. A minimiser is the smallest value in a window.

Detailed Description

Provides seqan3::views::minimiser.

Author

Mitra Darvish <mitra.darvish AT fu-berlin.de>