seqan3/main_user/alignment_2pairwise_2all_8hpp_source.html

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin

// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik

// SPDX-License-Identifier: BSD-3-Clause


#pragma once


#include <seqan3/alignment/pairwise/align_pairwise.hpp>

#include <seqan3/alignment/pairwise/align_result_selector.hpp>

#include <seqan3/alignment/pairwise/alignment_algorithm.hpp>

#include <seqan3/alignment/pairwise/alignment_configurator.hpp>

#include <seqan3/alignment/pairwise/alignment_result.hpp>

#include <seqan3/alignment/pairwise/edit_distance_algorithm.hpp>

#include <seqan3/alignment/pairwise/edit_distance_fwd.hpp>

#include <seqan3/alignment/pairwise/edit_distance_unbanded.hpp>

#include <seqan3/alignment/pairwise/policy/all.hpp>

align_pairwise.hpp
Provides pairwise alignment function.

align_result_selector.hpp
Provides seqan3::detail::align_result_selector.

alignment_algorithm.hpp
Provides seqan3::detail::alignment_algorithm.

alignment_configurator.hpp
Provides seqan3::detail::alignment_selector.

alignment_result.hpp
Provides seqan3::alignment_result.

edit_distance_algorithm.hpp
Provides seqan3::detail::edit_distance_algorithm.

edit_distance_fwd.hpp
Forwards for seqan3::edit_distance_unbanded related types.

edit_distance_unbanded.hpp
Provides a pairwise alignment algorithm for edit distance but without band.