SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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The 15 letter DNA alphabet, containing all IUPAC smybols minus the gap. More...
#include <seqan3/alphabet/nucleotide/dna15.hpp>
Public Member Functions | |
Constructors, destructor and assignment | |
constexpr | dna15 () noexcept=default |
Defaulted. | |
constexpr | dna15 (dna15 const &) noexcept=default |
Defaulted. | |
constexpr | dna15 (dna15 &&) noexcept=default |
Defaulted. | |
constexpr dna15 & | operator= (dna15 const &) noexcept=default |
Defaulted. | |
constexpr dna15 & | operator= (dna15 &&) noexcept=default |
Defaulted. | |
~dna15 () noexcept=default | |
Defaulted. | |
template<std::same_as< rna15 > t> | |
constexpr | dna15 (t const &r) noexcept |
Allow implicit construction from seqan3::rna15 of the same size. | |
Public Member Functions inherited from seqan3::nucleotide_base< dna15, 15 > | |
constexpr dna15 | complement () const noexcept |
Return the complement of the letter. | |
constexpr | nucleotide_base (other_nucl_type const &other) noexcept |
Allow explicit construction from any other nucleotide type and convert via the character representation. | |
Public Member Functions inherited from seqan3::alphabet_base< derived_type, size, char_t > | |
constexpr | alphabet_base () noexcept=default |
Defaulted. | |
constexpr | alphabet_base (alphabet_base const &) noexcept=default |
Defaulted. | |
constexpr | alphabet_base (alphabet_base &&) noexcept=default |
Defaulted. | |
constexpr alphabet_base & | operator= (alphabet_base const &) noexcept=default |
Defaulted. | |
constexpr alphabet_base & | operator= (alphabet_base &&) noexcept=default |
Defaulted. | |
~alphabet_base () noexcept=default | |
Defaulted. | |
constexpr char_type | to_char () const noexcept |
Return the letter as a character of char_type. | |
constexpr rank_type | to_rank () const noexcept |
Return the letter's numeric value (rank in the alphabet). | |
constexpr derived_type & | assign_char (char_type const chr) noexcept |
Assign from a character, implicitly converts invalid characters. | |
constexpr derived_type & | assign_rank (rank_type const c) noexcept |
Assign from a numeric value. | |
Related Symbols | |
(Note that these are not member symbols.) | |
using | dna15_vector = std::vector< dna15 > |
Alias for a std::vector of seqan3::dna15. | |
Additional Inherited Members | |
Static Public Member Functions inherited from seqan3::nucleotide_base< dna15, 15 > | |
static constexpr bool | char_is_valid (char_type const c) noexcept |
Validate whether a character value has a one-to-one mapping to an alphabet value. | |
Static Public Attributes inherited from seqan3::alphabet_base< derived_type, size, char_t > | |
static constexpr detail::min_viable_uint_t< size > | alphabet_size = size |
The size of the alphabet, i.e. the number of different values it can take. | |
Protected Types inherited from seqan3::alphabet_base< derived_type, size, char_t > | |
using | char_type = std::conditional_t< std::same_as< char_t, void >, char, char_t > |
The char representation; conditional needed to make semi alphabet definitions legal. | |
using | rank_type = detail::min_viable_uint_t< size - 1 > |
The type of the alphabet when represented as a number (e.g. via to_rank()). | |
The 15 letter DNA alphabet, containing all IUPAC smybols minus the gap.
Note that you can assign 'U' as a character to dna15 and it will silently be converted to 'T'.
Like most alphabets, this alphabet cannot be initialised directly from its character representation. Instead initialise/assign from the character literal 'A'_dna15 or use the function seqan3::dna15::assign_char().
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inlineconstexprnoexcept |
Allow implicit construction from seqan3::rna15 of the same size.
Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::dna15 and seqan3::rna15 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion).
seqan3::sequence
s (e.g. seqan3::dna15_vector) in general are not implicitly convertible and must be explicitly copied to be converted: std::ranges::view
s:
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related |