92 return dna5::rank_complement(rank);
98 return rank_to_char_table[rank];
104 return dna5::char_to_rank(chr);
122inline namespace literals
139constexpr rna5 operator""_rna5(
char const c)
noexcept
158 for (
size_t i = 0;
i < n; ++
i)
159 r[
i].assign_char(s[
i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition alphabet_base.hpp:77
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition alphabet_base.hpp:69
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition alphabet_base.hpp:184
A "pretty printer" for most SeqAn data structures and related types.
Definition debug_stream_type.hpp:79
The five letter DNA alphabet of A,C,G,T and the unknown character N.
Definition dna5.hpp:48
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition nucleotide_base.hpp:41
The five letter RNA alphabet of A,C,G,U and the unknown character N.
Definition rna5.hpp:46
constexpr rna5() noexcept=default
Defaulted.
Provides seqan3::dna5, container aliases and string literals.
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.