Overview

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Chaining

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Index

BottomUp Iterator

FixedGappedShape

FixedShape

GappedShape

Index_ESA

Index_QGram

MUMs Iterator

MaxRepeats Iterator

MultiMEMs Iterator

SimpleShape

SuperMaxRepeats Iterator

SuperMaxRepeatsFast Iterator

TopDown Iterator

TopDownHistory Iterator

VSTree Iterator

Iterators

Miscellaneous

Modifier

Motif Search

Pattern Matching

Pipelining

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Scoring

Searching

Segments

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