Overview

Concepts

Classes

Specializations

Shortcuts

Functions

Alignments

Alphabets

Array Handling

Blast

Chaining

Comparisons

Containers

Content Manipulation

Dependent Objects

Graph

Index

Input/Output

Iteration

Map

Memory

Miscellaneous

addOption

adjustTop

appendCmdLine

argumentCount

getArgumentValue

getOptionValue

hasOption

help

helpText

id

isSet

log2

longName

parse

requiredArguments

setHelpText

setLongName

setShortName

shareResources

shortHelp

shortName

Motif Search

Pipelining

Scoring

Searching

Seed Handling

Sequences

Metafunctions

Tags

Adaptions

Examples

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