Function
score
Returns the score for aligning the characters valH and valV .
Include Headers
seqan/score.h
Parameters
A scoring scheme. The scoring scheme to use. | |
Aligned character in the first sequence. | |
Aligned character in the second sequence. | |
Entry in sequence one. Types: SequenceEntryForScore | |
Entry in sequence two. Types: SequenceEntryForScore |
Status
The version that explicitely requires two characters is deprecated. For using (or defining) custom scoring schemes better use the functions
score, scoreGapOpenVertical, scoreGapExtendVertical, scoreGapOpenHorizontal and scoreGapExtendHorizontal
as they require character positions and sequences and allow for position-dependent scoring schemes.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de