Class Specialization
N2 AFScore
N2 computes the inner product of the standardised neighbourhood kmer count vectors
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N2 AFScore | |||||||
Include Headers
seqan/alignment_free.h
Remarks
N2 can be used for alignment-free sequence comparison.
Specialization of
Data Members
| Order of the background model | |
| Size of the kmers | |
| Approximate word matches [0(exact)/1(one mismatch)] | |
| Weight for approximate word matches | |
| When specified, all kmerWeights for every sequence will be written to this file | |
| Scoring of reverse complements words [''/'max'/'min'/'mean'/'both_strands'/] |
Member Functions
| Constructor |
Functions
| Computes the pairwise similarity scores for a set of sequences (AFScore) |
SeqAn - Sequence Analysis Library - www.seqan.de