Represents an alignment between read and contig.
Type to store (gap-space) positions.
Type of a read gap anchor.
The specialization type.
|Type of the gaps member.|
|Type of all stored ids.|
|Type of the beginPos and endPos members.|
|The specialization type.|
|Begin position of the alignment in gap-space.|
|Refers to the contig in the contigStore the read is aligned with.|
|End position of the alignment in gap-space. If endPos < beginPos, the read is aligned to the reverse strand, where beginPos and endPos are the corresponding positions on the forward strand.|
|String of read gap anchors. Can be used to create a AnchorGaps alignment row.|
|The alignment id refers to associated alignment information in alignQualityStore or alignedReadTagStore.|
|Constant to represent an invalid id.|
|Two read alignments having the same pairMatchId form a valid pair match. If it equals INVALID_ID, the read is either not paired or could not be aligned as part of a pair match.|
|Refers to the aligned read in the readStore.|
|Get the "clear" range of a read alignment.|
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