Holds a collection of objects of a specific type, where each object represents the frequency (absolute or relative probability) of a particular residue which is a member of a fixed sequence alphabet.
Note: There are various known problems with the motif finding in SeqAn. We plan to fix this in an upcoming release.
The type of sequence which is considered.
The type of probability distribution.
Remarks: It is preferable to use
The number of objects in FrequencyDistribution equals the size of the sequence alphabet.
|Type of iterator objects that are used to traverse the container.|
|Type of an object that represents a position in a container.|
|Type of an object that is suitable to hold size information.|
|The spec of a class.|
|Type of the items in the container or behind an iterator.|
|Counts the number of times each residue of a fixed sequence alphabet occurs in a given sequence.|
|Counts the number of times each residue of a fixed sequence alphabet occurs in a given set of sequences.|
|Adds a value of a specific type to each element of a given FrequencyDistribution object.|
|Determines the background letter frequencies in a given dataset|
|The begin of a container.|
|Resets an object.|
|Concatenates the background frequency with the profile for the motif component.|
|Coverts a residue to a frequency distribution (profile).|
|The end of a container.|
|The number of items/characters.|
|Logarithmizes each element of a given FrequencyDistribution object.|
|Determines the normalized frequencies.|
|Determines the residue position in a given FrequencyDistribution object with the maximum frequency.|
|Determines the sum of all frequencies in a given FrequencyDistribution object.|
SeqAn - Sequence Analysis Library - www.seqan.de