format_bam.hpp File Reference

Provides the seqan3::format_bam. More...

#include <bit>
#include <cstring>
#include <iterator>
#include <ranges>
#include <string>
#include <vector>
#include <seqan3/alphabet/nucleotide/dna16sam.hpp>
#include <seqan3/core/debug_stream/optional.hpp>
#include <seqan3/core/debug_stream/tuple.hpp>
#include <seqan3/io/sam_file/detail/cigar.hpp>
#include <seqan3/io/sam_file/detail/format_sam_base.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/input_options.hpp>
#include <seqan3/io/sam_file/sam_flag.hpp>
#include <seqan3/io/sam_file/sam_tag_dictionary.hpp>
#include <seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp>
#include <seqan3/io/views/detail/istreambuf_view.hpp>
#include <seqan3/io/views/detail/take_exactly_view.hpp>
#include <seqan3/utility/views/slice.hpp>

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Classes
struct	seqan3::format_bam::alignment_record_core
	Stores all fixed length variables which can be read/written directly by reinterpreting the binary stream. More...
class	seqan3::format_bam
	The BAM format. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_bam.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>