execute.cpp File Reference

#include <cassert>
#include <cinttypes>
#include <cmath>
#include <cstddef>
#include <filesystem>
#include <fstream>
#include <iostream>
#include <stdexcept>
#include <string>
#include <tuple>
#include <vector>
#include <chopper/configuration.hpp>
#include <chopper/layout/determine_best_number_of_technical_bins.hpp>
#include <chopper/layout/execute.hpp>
#include <chopper/layout/hibf_statistics.hpp>
#include <chopper/layout/output.hpp>
#include <chopper/next_multiple_of_64.hpp>
#include <hibf/layout/compute_layout.hpp>
#include <hibf/layout/layout.hpp>
#include <hibf/misc/iota_vector.hpp>
#include <hibf/sketch/estimate_kmer_counts.hpp>
#include <hibf/sketch/hyperloglog.hpp>

Namespaces
namespace	chopper
namespace	chopper::layout

Functions
int	chopper::layout::execute (chopper::configuration &config, std::vector< std::vector< std::string > > const &filenames, std::vector< seqan::hibf::sketch::hyperloglog > const &sketches)