Classes
class	hibf_statistics

class	ibf_query_cost

Functions
seqan::hibf::layout::layout	determine_best_number_of_technical_bins (chopper::configuration &config, std::vector< size_t > const &kmer_counts, std::vector< seqan::hibf::sketch::hyperloglog > const &sketches)

int	execute (chopper::configuration &config, std::vector< std::vector< std::string > > const &filenames, std::vector< seqan::hibf::sketch::hyperloglog > const &sketches)

std::vector< std::vector< std::string > >	read_filenames_from (std::istream &stream)

std::tuple< std::vector< std::vector< std::string > >, configuration, seqan::hibf::layout::layout >	read_layout_file (std::istream &stream)

void	write_user_bins_to (std::vector< std::vector< std::string > > const &filenames, std::ostream &stream)

Function Documentation

◆ determine_best_number_of_technical_bins()

seqan::hibf::layout::layout chopper::layout::determine_best_number_of_technical_bins	(	chopper::configuration &	config,
		std::vector< size_t > const &	kmer_counts,
		std::vector< seqan::hibf::sketch::hyperloglog > const &	sketches
	)

◆ execute()

int chopper::layout::execute	(	chopper::configuration &	config,
		std::vector< std::vector< std::string > > const &	filenames,
		std::vector< seqan::hibf::sketch::hyperloglog > const &	sketches
	)

◆ read_filenames_from()

std::vector< std::vector< std::string > > chopper::layout::read_filenames_from ( std::istream & stream )

◆ read_layout_file()

std::tuple< std::vector< std::vector< std::string > >, configuration, seqan::hibf::layout::layout > chopper::layout::read_layout_file ( std::istream & stream )

◆ write_user_bins_to()

void chopper::layout::write_user_bins_to	(	std::vector< std::vector< std::string > > const &	filenames,
		std::ostream &	stream
	)