input.hpp

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// ---------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/chopper/blob/main/LICENSE.md
// ---------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <iosfwd>
#include <string>
#include <tuple>
#include <vector>
 
#include <chopper/configuration.hpp>
 
#include <hibf/layout/layout.hpp>
 
namespace chopper::layout
{
 
std::vector<std::vector<std::string>> read_filenames_from(std::istream & stream);
std::tuple<std::vector<std::vector<std::string>>, configuration, seqan::hibf::layout::layout>
read_layout_file(std::istream & stream);
 
} // namespace chopper::layout