chopper::sketch Namespace Reference

Classes
struct	sketch_file

Functions
void	check_filenames (std::vector< std::string > const &filenames, configuration &config)
	Checks the filenames for consistent files, either precomputed or sequence files. More...
void	check_filenames (std::vector< std::vector< std::string > > const &filenames, configuration &config)
	This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. More...
void	write_count_file_line (std::pair< std::string, std::vector< std::string > > const &cluster, uint64_t const weight, std::ofstream &fout)
void	write_sketch_file (std::string const &filename, seqan::hibf::sketch::hyperloglog const &sketch, configuration const &config)
void	read_data_file (configuration const &config, std::vector< std::vector< std::string > > &filenames)

Function Documentation

check_filenames() [1/2]

void chopper::sketch::check_filenames	(	std::vector< std::string > const &	filenames,
		configuration &	config
	)

Checks the filenames for consistent files, either precomputed or sequence files.

check_filenames() [2/2]

void chopper::sketch::check_filenames	(	std::vector< std::vector< std::string > > const &	filenames,
		configuration &	config
	)

This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts.

read_data_file()

void chopper::sketch::read_data_file	(	configuration const &	config,
		std::vector< std::vector< std::string > > &	filenames
	)

write_count_file_line()

void chopper::sketch::write_count_file_line	(	std::pair< std::string, std::vector< std::string > > const &	cluster,
		uint64_t const	weight,
		std::ofstream &	fout
	)

write_sketch_file()

void chopper::sketch::write_sketch_file	(	std::string const &	filename,
		seqan::hibf::sketch::hyperloglog const &	sketch,
		configuration const &	config
	)