shared.hpp File Reference

#include <cstdint>
#include <filesystem>
#include <string>
#include <vector>
#include <hibf/contrib/robin_hood.hpp>
#include <hibf/sketch/hyperloglog.hpp>

Go to the source code of this file.

Classes
struct	config

Functions
void	execute_general (config const &cfg)
void	execute_sizes (config const &cfg)
void	process_file (std::string const &filename, std::vector< uint64_t > &current_kmers, uint8_t const kmer_size, uint8_t const window_size)
void	process_file (std::string const &filename, robin_hood::unordered_set< uint64_t > &current_kmer_set, std::vector< uint64_t > &current_kmers, seqan::hibf::sketch::hyperloglog &sketch, bool const fill_current_kmers, uint8_t const kmer_size, uint8_t const window_size)

Function Documentation

execute_general()

void execute_general

(

config const &

cfg

)

execute_sizes()

void execute_sizes

(

config const &

cfg

)

process_file() [1/2]

void process_file	(	std::string const &	filename,
		robin_hood::unordered_set< uint64_t > &	current_kmer_set,
		std::vector< uint64_t > &	current_kmers,
		seqan::hibf::sketch::hyperloglog &	sketch,
		bool const	fill_current_kmers,
		uint8_t const	kmer_size,
		uint8_t const	window_size
	)

process_file() [2/2]

void process_file	(	std::string const &	filename,
		std::vector< uint64_t > &	current_kmers,
		uint8_t const	kmer_size,
		uint8_t const	window_size
	)