chopper::input_functor Struct Reference

#include <chopper/input_functor.hpp>

Classes
struct	dna4_traits

Public Types
using	sequence_file_type = seqan3::sequence_file_input< dna4_traits, seqan3::fields< seqan3::field::seq >, seqan3::type_list< seqan3::format_fasta, seqan3::format_fastq > >

Public Member Functions
void	operator() (size_t const num, seqan::hibf::insert_iterator it)

Public Attributes
std::vector< std::vector< std::string > >	filenames
bool	input_are_precomputed_files {false}
uint8_t	kmer_size {21}
uint8_t	window_size {21}

Member Typedef Documentation

sequence_file_type

using chopper::input_functor::sequence_file_type = seqan3::sequence_file_input<dna4_traits, seqan3::fields<seqan3::field::seq>, seqan3::type_list<seqan3::format_fasta, seqan3::format_fastq> >

Member Function Documentation

operator()()

void chopper::input_functor::operator()	(	size_t const	num,
		seqan::hibf::insert_iterator	it
	)

Member Data Documentation

filenames

std::vector<std::vector<std::string> > chopper::input_functor::filenames

input_are_precomputed_files

bool chopper::input_functor::input_are_precomputed_files {false}

kmer_size

uint8_t chopper::input_functor::kmer_size {21}

window_size

uint8_t chopper::input_functor::window_size {21}

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The documentation for this struct was generated from the following files:

• include/chopper/input_functor.hpp
• src/input_functor.cpp