compute_layout.hpp

// SPDX-FileCopyrightText: 2006-2025, Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025, Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <cstddef> // for size_t
#include <vector>  // for vector
 
#include <hibf/config.hpp>             // for config
#include <hibf/layout/layout.hpp>      // for layout
#include <hibf/misc/timer.hpp>         // for concurrent, timer
#include <hibf/sketch/hyperloglog.hpp> // for hyperloglog
 
namespace seqan::hibf::layout
{
 
layout compute_layout(config const & config,
                      std::vector<size_t> const & kmer_counts,
                      std::vector<sketch::hyperloglog> const & sketches,
                      std::vector<size_t> && positions,
                      concurrent_timer & union_estimation_timer,
                      concurrent_timer & rearrangement_timer);
 
layout compute_layout(config const & config,
                      std::vector<size_t> const & kmer_counts,
                      std::vector<sketch::hyperloglog> const & sketches);
 
} // namespace seqan::hibf::layout