update_parent_kmers.hpp

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// SPDX-FileCopyrightText: 2006-2025, Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025, Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <cstdint>    // for uint64_t
#include <functional> // for equal_to
 
#include <hibf/contrib/robin_hood.hpp> // for unordered_flat_set, hash
#include <hibf/misc/timer.hpp>         // for serial_timer, concurrent_timer
#include <hibf/platform.hpp>
 
namespace seqan::hibf::build
{
 
inline void update_parent_kmers(robin_hood::unordered_flat_set<uint64_t> & parent_kmers,
                                robin_hood::unordered_flat_set<uint64_t> const & kmers,
                                concurrent_timer & merge_kmers_timer)
{
    serial_timer local_merge_kmers_timer{};
    local_merge_kmers_timer.start();
    parent_kmers.insert(kmers.begin(), kmers.end());
    local_merge_kmers_timer.stop();
    merge_kmers_timer += local_merge_kmers_timer;
}
inline void update_parent_kmers(robin_hood::unordered_flat_set<uint64_t> & parent_kmers, {…}
 
} // namespace seqan::hibf::build