Provides raptor::delete_user_bins. More...

#include <raptor/argument_parsing/update_arguments.hpp>
#include <raptor/index.hpp>

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Functions
void	raptor::delete_user_bins (update_arguments const &arguments, raptor_index< index_structure::hibf > &index)
	Deletes the user bins listed in `arguments.user_bins_to_delete` from `index`.

Detailed Description

Provides raptor::delete_user_bins.

Author: Enrico Seiler <enrico.seiler AT fu-berlin.de>

Function Documentation

◆ delete_user_bins()

void raptor::delete_user_bins	(	update_arguments const &	arguments,
		raptor_index< index_structure::hibf > &	index )

Deletes the user bins listed in arguments.user_bins_to_delete from index.

Parameters

[in]	arguments	The update arguments.
[in,out]	index	The index to delete from.

The technical bins holding a deleted user bin are cleared and marked as seqan::hibf::bin_kind::deleted, and their occupancy is reset. The freed technical bins are reused by a subsequent raptor::insert_user_bin.

An IBF whose bins all became empty is additionally cleared in its parent's merged bin, and the subtree it roots is retired, see raptor::detail::retire_ibf: their bit vectors are released, but their slots in ibf_vector are kept so that the IBF indices stored throughout the index stay valid.

User bin IDs are not reassigned, hence the IDs of the remaining user bins stay valid. A deleted user bin keeps its entry in the bin path until a full rebuild drops it and renumbers the remaining user bins, see raptor::insert_user_bin.

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Functions

Detailed Description

Function Documentation

◆ delete_user_bins()