src → raptor Relation

File in src	Includes file in raptor
argument_parsing / build_arguments.cpp	argument_parsing / build_arguments.hpp
argument_parsing / build_arguments.cpp	argument_parsing / cpu_time.hpp
argument_parsing / build_arguments.cpp	argument_parsing / formatted_index_size.hpp
argument_parsing / build_arguments.cpp	argument_parsing / memory_usage.hpp
build / build_hibf.cpp	build / build_hibf.hpp
build / build_hibf.cpp	file_reader.hpp
build / build_hibf.cpp	build / store_index.hpp
build / build_ibf.cpp	build / index_factory.hpp
build / build_ibf.cpp	build / max_count_per_partition.hpp
build / build_ibf.cpp	build / partition_config.hpp
build / build_ibf.cpp	build / store_index.hpp
argument_parsing / build_parsing.cpp	argument_parsing / build_parsing.hpp
argument_parsing / build_parsing.cpp	argument_parsing / compute_bin_size.hpp
argument_parsing / build_parsing.cpp	argument_parsing / parse_bin_path.hpp
argument_parsing / build_parsing.cpp	build / raptor_build.hpp
argument_parsing / build_parsing.cpp	argument_parsing / shared.hpp
argument_parsing / build_parsing.cpp	argument_parsing / validators.hpp
argument_parsing / compute_bin_size.cpp	adjust_seed.hpp
argument_parsing / compute_bin_size.cpp	call_parallel_on_bins.hpp
argument_parsing / compute_bin_size.cpp	argument_parsing / compute_bin_size.hpp
argument_parsing / compute_bin_size.cpp	dna4_traits.hpp
argument_parsing / compute_bin_size.cpp	file_reader.hpp
prepare / compute_minimiser.cpp	adjust_seed.hpp
prepare / compute_minimiser.cpp	prepare / compute_minimiser.hpp
prepare / compute_minimiser.cpp	prepare / cutoff.hpp
prepare / compute_minimiser.cpp	dna4_traits.hpp
prepare / compute_minimiser.cpp	file_reader.hpp
update / insert / get_location.cpp	index.hpp
inspect / index_metadata.hpp	index.hpp
inspect / index_metadata.hpp	argument_parsing / inspect_arguments.hpp
update / insert / insert_tb_and_parents.cpp	index.hpp
argument_parsing / inspect_parsing.cpp	inspect / inspect.hpp
argument_parsing / inspect_parsing.cpp	argument_parsing / inspect_parsing.hpp
argument_parsing / inspect_parsing.cpp	argument_parsing / validators.hpp
update / insert / is_fpr_exceeded.hpp	index.hpp
inspect / json_writer.cpp	inspect / json_writer.hpp
build / max_count_per_partition.cpp	call_parallel_on_bins.hpp
build / max_count_per_partition.cpp	file_reader.hpp
build / max_count_per_partition.cpp	build / max_count_per_partition.hpp
argument_parsing / parse_bin_path.cpp	argument_parsing / parse_bin_path.hpp
argument_parsing / parse_bin_path.cpp	argument_parsing / validators.hpp
argument_parsing / prepare_parsing.cpp	prepare / compute_minimiser.hpp
argument_parsing / prepare_parsing.cpp	argument_parsing / parse_bin_path.hpp
argument_parsing / prepare_parsing.cpp	argument_parsing / prepare_arguments.hpp
argument_parsing / prepare_parsing.cpp	argument_parsing / prepare_parsing.hpp
argument_parsing / prepare_parsing.cpp	argument_parsing / shared.hpp
argument_parsing / prepare_parsing.cpp	argument_parsing / validators.hpp
raptor.cpp	argument_parsing / build_parsing.hpp
raptor.cpp	argument_parsing / inspect_parsing.hpp
raptor.cpp	argument_parsing / prepare_parsing.hpp
raptor.cpp	raptor.hpp
raptor.cpp	layout / raptor_layout.hpp
raptor.cpp	argument_parsing / search_parsing.hpp
raptor.cpp	argument_parsing / update_parsing.hpp
raptor.cpp	argument_parsing / upgrade_parsing.hpp
build / raptor_build.cpp	build / build_hibf.hpp
build / raptor_build.cpp	build / build_ibf.hpp
build / raptor_build.cpp	build / raptor_build.hpp
inspect / raptor_inspect.cpp	inspect / inspect.hpp
search / raptor_search.cpp	search / fpga / search_fpga.hpp
search / raptor_search.cpp	search / search_hibf.hpp
search / raptor_search.cpp	search / search_ibf.hpp
search / raptor_search.cpp	search / search_partitioned_ibf.hpp
argument_parsing / search_arguments.cpp	argument_parsing / cpu_time.hpp
argument_parsing / search_arguments.cpp	argument_parsing / formatted_index_size.hpp
argument_parsing / search_arguments.cpp	argument_parsing / memory_usage.hpp
argument_parsing / search_arguments.cpp	argument_parsing / search_arguments.hpp
search / fpga / search_fpga.cpp	search / fpga / search_fpga.hpp
search / fpga / search_fpga.cpp	search / sync_out.hpp
search / fpga / search_fpga.cpp	threshold / threshold.hpp
search / search_hibf.cpp	search / search_hibf.hpp
search / search_hibf.cpp	search / search_singular_ibf.hpp
search / search_ibf.cpp	search / search_ibf.hpp
search / search_ibf.cpp	search / search_singular_ibf.hpp
argument_parsing / search_parsing.cpp	dna4_traits.hpp
argument_parsing / search_parsing.cpp	index.hpp
argument_parsing / search_parsing.cpp	search / search.hpp
argument_parsing / search_parsing.cpp	argument_parsing / search_parsing.hpp
argument_parsing / search_parsing.cpp	argument_parsing / validators.hpp
search / search_partitioned_ibf.cpp	adjust_seed.hpp
search / search_partitioned_ibf.cpp	dna4_traits.hpp
search / search_partitioned_ibf.cpp	search / do_parallel.hpp
search / search_partitioned_ibf.cpp	search / load_index.hpp
search / search_partitioned_ibf.cpp	build / partition_config.hpp
search / search_partitioned_ibf.cpp	search / search_partitioned_ibf.hpp
search / search_partitioned_ibf.cpp	search / sync_out.hpp
search / search_partitioned_ibf.cpp	threshold / threshold.hpp
argument_parsing / update_arguments.cpp	argument_parsing / update_arguments.hpp
argument_parsing / update_parsing.cpp	index.hpp
argument_parsing / update_parsing.cpp	argument_parsing / parse_bin_path.hpp
argument_parsing / update_parsing.cpp	update / update.hpp
argument_parsing / update_parsing.cpp	argument_parsing / update_parsing.hpp
argument_parsing / update_parsing.cpp	argument_parsing / validators.hpp
argument_parsing / upgrade_parsing.cpp	index.hpp
argument_parsing / upgrade_parsing.cpp	argument_parsing / parse_bin_path.hpp
argument_parsing / upgrade_parsing.cpp	build / partition_config.hpp
argument_parsing / upgrade_parsing.cpp	upgrade / upgrade.hpp
argument_parsing / upgrade_parsing.cpp	argument_parsing / upgrade_parsing.hpp
argument_parsing / upgrade_parsing.cpp	argument_parsing / validators.hpp
inspect / write_metadata.cpp	inspect / json_writer.hpp
threshold / multiple_error_model.cpp	threshold / logspace.hpp
threshold / multiple_error_model.cpp	threshold / multiple_error_model.hpp
threshold / one_error_model.cpp	threshold / logspace.hpp
threshold / one_error_model.cpp	threshold / one_error_model.hpp
threshold / one_error_model.cpp	threshold / pascal_row.hpp
threshold / one_indirect_error_model.cpp	threshold / forward_strand_minimiser.hpp
threshold / one_indirect_error_model.cpp	threshold / one_indirect_error_model.hpp
threshold / pascal_row.cpp	threshold / pascal_row.hpp
threshold / precompute_correction.cpp	threshold / logspace.hpp
threshold / precompute_correction.cpp	threshold / pascal_row.hpp
threshold / precompute_correction.cpp	threshold / precompute_correction.hpp
threshold / precompute_threshold.cpp	threshold / logspace.hpp
threshold / precompute_threshold.cpp	threshold / multiple_error_model.hpp
threshold / precompute_threshold.cpp	threshold / one_error_model.hpp
threshold / precompute_threshold.cpp	threshold / one_indirect_error_model.hpp
threshold / precompute_threshold.cpp	threshold / precompute_threshold.hpp
threshold / threshold.cpp	threshold / threshold.hpp
update / delete_user_bins.cpp	update / delete_user_bins.hpp
update / dump_index.cpp	update / dump_index.hpp
update / insert_user_bin.cpp	argument_parsing / update_arguments.hpp
update / insert_user_bin.cpp	file_reader.hpp
update / insert_user_bin.cpp	index.hpp
update / raptor_update.cpp	build / store_index.hpp
update / raptor_update.cpp	index.hpp
update / raptor_update.cpp	update / delete_user_bins.hpp
update / raptor_update.cpp	update / dump_index.hpp
update / raptor_update.cpp	update / insert_user_bin.hpp
update / raptor_update.cpp	update / update.hpp
update / subtree.hpp	index.hpp
upgrade / raptor_upgrade.cpp	argument_parsing / compute_bin_size.hpp
upgrade / raptor_upgrade.cpp	argument_parsing / validators.hpp
upgrade / raptor_upgrade.cpp	build / max_count_per_partition.hpp
upgrade / raptor_upgrade.cpp	upgrade / index_upgrader.hpp
upgrade / raptor_upgrade.cpp	upgrade / upgrade.hpp