Spec Max Repeats Iterator
Iterator to search for all maximal repeats.

Extends BottomUpIterator
All Extended BottomUpIterator, Iter, VSTreeIterator
All Impl'd CopyConstructibleConcept, DefaultConstructibleConcept, EqualityComparableConcept, ForwardIteratorConcept, InputIteratorConcept, IteratorAssociatedTypesConcept
Defined in <seqan/index.h>
Signature Iterator<TContainer, MaxRepeats>::Type; template <typename TContainer> class Iter<TContainer, VSTree< BottomUp<MaxRepeats> > >;

Template Parameters

TContainer Type of an index that can be iterated with a bottom-up iterator. Types: IndexEsa

Member Function Overview

Member Functions Inherited From BottomUpIterator

Member Functions Inherited From EqualityComparableConcept

Interface Function Overview

Interface Functions Inherited From BottomUpIterator

Interface Functions Inherited From VSTreeIterator

Interface Functions Inherited From InputIteratorConcept

Interface Functions Inherited From IteratorAssociatedTypesConcept

Interface Metafunction Overview

Interface Metafunctions Inherited From Iter

Interface Metafunctions Inherited From VSTreeIterator

Interface Metafunctions Inherited From IteratorAssociatedTypesConcept

Detailed Description


Instead of using the class Iter directly we recommend to use the result of the metafunction Iterator<TContainer, MaxRepeats>::Type (which is Iter<TContainer, VSTree< BottomUp<MaxRepeats> > >).

See Also

Member Functions Detail

Iter::Iter(index[, minLength]); Iter::Iter(iterator);

The constructor


index The index to be used for the iteration. Types: IndexEsa
minLength Minimum length of the supermaximal repeats, default value is 1.
iterator Another MaxRepeats iterator. Types: MaxRepeatsIterator

Interface Functions Detail

TSize length(it);

Return the number of repeats.


it The MaxRepeatsIterator to query.


TSize The number of found repeats.