Spec Super Max Repeats Fast Iterator
Iterator to search for all supermaximal repeats (for enh. suffix arrays only).

Extends BottomUpIterator
All Extended BottomUpIterator, Iter, VSTreeIterator
All Impl'd CopyConstructibleConcept, DefaultConstructibleConcept, EqualityComparableConcept, ForwardIteratorConcept, InputIteratorConcept, IteratorAssociatedTypesConcept
Defined in <seqan/index.h>
Signature Iterator<TContainer, SuperMaxRepeatsFast>::Type; template <typename TContainer> class Iter<TContainer, VSTree<BottomUp<SuperMaxRepeatsFast> > >;

Template Parameters

TContainer Type of an index based on enhanced suffix array. Types: IndexEsa

Member Function Overview

Member Functions Inherited From BottomUpIterator

Member Functions Inherited From EqualityComparableConcept

Interface Function Overview

Interface Functions Inherited From BottomUpIterator

Interface Functions Inherited From VSTreeIterator

Interface Functions Inherited From InputIteratorConcept

Interface Functions Inherited From IteratorAssociatedTypesConcept

Interface Metafunction Overview

Interface Metafunctions Inherited From Iter

Interface Metafunctions Inherited From VSTreeIterator

Interface Metafunctions Inherited From IteratorAssociatedTypesConcept

Detailed Description


Instead of using the class Iter directly we recommend to use the result of the metafunction Iterator<TContainer, SuperMaxRepeatsFast>::Type (which is Iter<TContainer, VSTree< BottomUp<SuperMaxRepeatsFast> > >).

Member Functions Detail

Iter::Iter(index[, minLength]); Iter::Iter(iterator);

The constructor


index The index to be used for the iteration. Types: IndexEsa
minLength Minimum length of the supermaximal repeats, default value is 1.
iterator Another SuperMaxRepeatsFast iterator. Types: SuperMaxRepeatsFastIterator