Holds the algorithm parameter values and the motif instance(s) found by the appropriate motif discovery algorithm.
Note: There are various known problems with the motif finding in SeqAn. We plan to fix this in an upcoming release.
The motif finding algorithm to search with.
The type of sequences to be analyzed.
The Rng specialization to use for random number generation.
|Represents the ePatternBranching algorithm of Davila and Rajasekaran.|
|Represents the Pms1 algorithm developed by Rajasekaran et al.|
|Represents the Pmsp algorithm of Davila et al.|
|Represents the PROJECTION algorithm of Buhler and Tompa.|
|Type of the items in the container or behind an iterator.|
|Displays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate.|
|Represents the main function which is used to start the search for noticeable motif patterns.|
|Gets the motif out of a MotifFinder. If pos is given, the pos-th motif is returned, otherwise the first motif is returned.|
|Gets number of motifs in the MotifFinder.|
SeqAn - Sequence Analysis Library - www.seqan.de