SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Welcome
Setup
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
Cookbook
About
Stability and long-term promises
Citing
Customisation
Changelog
Copyright
Code of Conduct
Contributing
API Reference
API Reference (details)
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Here is a list of all documented functions with links to the class documentation for each member:
- m -
mapping_quality() :
seqan3::sam_record< field_types, field_ids >
mask() :
seqan3::mask
masked() :
seqan3::masked< sequence_alphabet_t >
match_score() :
seqan3::match_score< score_type >
mate_position() :
seqan3::sam_record< field_types, field_ids >
mate_reference_id() :
seqan3::sam_record< field_types, field_ids >
max_error_deletion() :
seqan3::search_cfg::max_error_deletion
max_error_insertion() :
seqan3::search_cfg::max_error_insertion
max_error_substitution() :
seqan3::search_cfg::max_error_substitution
max_error_total() :
seqan3::search_cfg::max_error_total
max_size() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::small_string< capacity_ >
,
seqan3::small_vector< value_type_, capacity_ >
membership_agent() :
seqan3::interleaved_bloom_filter< data_layout_mode_ >
membership_agent_type() :
seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type
method_global() :
seqan3::align_cfg::method_global
method_local() :
seqan3::align_cfg::method_local
min_score() :
seqan3::align_cfg::min_score
mismatch_score() :
seqan3::mismatch_score< score_type >
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