Here is a list of all documented functions with links to the class documentation for each member:

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• off_type() : input_stream_over, output_stream_over
• offset_type() : structure_file_input_traits
• on_result() : seqan3::align_cfg::on_result< callback_t >, seqan3::search_cfg::on_result< callback_t >
• operator alphabet_type() : seqan3::alphabet_proxy< derived_type, alphabet_type >
• operator other_alph_t() : seqan3::semialphabet_any< size >
• operator other_t() : seqan3::alphabet_proxy< derived_type, alphabet_type >
• operator std::string() : seqan3::small_string< capacity_ >
• operator std::string_view() : seqan3::small_string< capacity_ >
• operator type() : seqan3::alphabet_tuple_base< derived_type, component_types >
• operator!=() : seqan3::aligned_allocator< value_t, alignment_v >, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::hamming_scoring_scheme, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• operator""_cigar_operation() : seqan3::cigar
• operator""_phred42() : seqan3::phred42
• operator""_phred63() : seqan3::phred63
• operator""_phred68solexa() : seqan3::phred68solexa
• operator""_phred94() : seqan3::phred94
• operator""_shape() : seqan3::shape
• operator""_tag() : seqan3::sam_tag_dictionary
• operator&() : enum_bitwise_operators
• operator&=() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >
• operator()() : seqan3::advanceable_alignment_coordinate_printer< detail::advanceable_alignment_coordinate< state_t > >, seqan3::alignment_matrix_printer< alignment_matrix_t >, seqan3::alignment_printer< alignment_t >, seqan3::alignment_result_printer< alignment_result< result_value_t > >, seqan3::alphabet_printer< alphabet_t >, seqan3::arithmetic_range_validator< option_value_t >, seqan3::char_sequence_printer< char_sequence_t >, seqan3::cigar_printer< cigar >, seqan3::debug_stream_printer< value_t >, seqan3::default_printer, seqan3::dynamic_bitset_printer< dynamic_bitset< bit_capacity > >, seqan3::enumeration_printer< enum_t >, seqan3::file_validator_base, seqan3::input_directory_validator, seqan3::input_file_validator< file_t >, seqan3::input_range_printer< rng_t >, seqan3::integral_printer< integral_t >, seqan3::mask_printer< mask_t >, seqan3::optional_printer< std::nullopt_t >, seqan3::optional_printer< std::optional< T > >, seqan3::output_directory_validator, seqan3::output_file_validator< file_t >, seqan3::regex_validator, seqan3::sam_flag_printer< sam_flag >, seqan3::search_result_printer< search_result< specs_t... > >, seqan3::sequence_printer< sequence_t >, seqan3::std_byte_printer< std::byte >, seqan3::std_printer< type_t >, seqan3::std_variant_printer< std::variant< variant_ts... > >, seqan3::trace_directions_printer< detail::trace_directions >, seqan3::tuple_printer< tuple_t >, seqan3::value_list_validator< option_value_t >, std::hash< alphabet_t >, std::hash< seqan3::dynamic_bitset< cap > >, std::hash< urng_t >, validator
• operator*() : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
• operator++() : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
• operator+=() : seqan3::counting_vector< value_t >
• operator-=() : seqan3::counting_vector< value_t >
• operator->() : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
• operator<() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator<<() : output_stream_over, seqan3::debug_stream_type< char_t >, seqan3::dynamic_bitset< bit_capacity >
• operator<<=() : seqan3::dynamic_bitset< bit_capacity >
• operator<=() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator=() : seqan3::aa10li, seqan3::aa10murphy, seqan3::aa20, seqan3::aa27, seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::algorithm_result_generator_range< algorithm_executor_type >, seqan3::align_cfg::band_fixed_size, seqan3::align_cfg::detail::result_type< alignment_result_t >, seqan3::align_cfg::gap_cost_affine, seqan3::align_cfg::method_global, seqan3::align_cfg::method_local, seqan3::align_cfg::min_score, seqan3::align_cfg::on_result< callback_t >, seqan3::align_cfg::output_alignment, seqan3::align_cfg::output_begin_position, seqan3::align_cfg::output_end_position, seqan3::align_cfg::output_score, seqan3::align_cfg::output_sequence1_id, seqan3::align_cfg::output_sequence2_id, seqan3::align_cfg::score_type< score_t >, seqan3::align_cfg::scoring_scheme< scoring_scheme_t >, seqan3::align_cfg::vectorised, seqan3::aligned_allocator< value_t, alignment_v >, seqan3::alignment_result< alignment_result_value_t >, seqan3::alphabet_base< derived_type, size, char_t >, seqan3::alphabet_tuple_base< derived_type, component_types >, seqan3::alphabet_variant< alternative_types >, seqan3::argument_parser, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::bloom_filter< data_layout_mode_ >, seqan3::cigar, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::configuration< configs_t >, seqan3::counting_vector< value_t >, seqan3::debug_stream_type< char_t >, seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5, seqan3::dot_bracket3, seqan3::dssp9, seqan3::dynamic_bitset< bit_capacity >, seqan3::exposition_only::cigar_operation, seqan3::file_validator_base, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::format_bam, seqan3::format_embl, seqan3::format_fasta, seqan3::format_fastq, seqan3::format_genbank, seqan3::format_sam, seqan3::format_vienna, seqan3::gap, seqan3::gap_decorator< inner_type >, seqan3::hamming_scoring_scheme, seqan3::input_directory_validator, seqan3::input_file_validator< file_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type, seqan3::interleaved_bloom_filter< data_layout_mode_ >, seqan3::mask, seqan3::masked< sequence_alphabet_t >, seqan3::output_directory_validator, seqan3::output_file_validator< file_t >, seqan3::phred42, seqan3::phred63, seqan3::phred68solexa, seqan3::phred94, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >, seqan3::record< field_types, field_ids >, seqan3::rna15, seqan3::rna4, seqan3::rna5, seqan3::sam_file_header< ref_ids_type >, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sam_record< field_types, field_ids >, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >, seqan3::search_cfg::detail::result_type< search_result_t >, seqan3::search_cfg::hit, seqan3::search_cfg::hit_all, seqan3::search_cfg::hit_all_best, seqan3::search_cfg::hit_single_best, seqan3::search_cfg::hit_strata, seqan3::search_cfg::max_error_deletion, seqan3::search_cfg::max_error_insertion, seqan3::search_cfg::max_error_substitution, seqan3::search_cfg::max_error_total, seqan3::search_cfg::on_result< callback_t >, seqan3::search_cfg::output_index_cursor, seqan3::search_cfg::output_query_id, seqan3::search_cfg::output_reference_begin_position, seqan3::search_cfg::output_reference_id, seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >, seqan3::semialphabet_any< size >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::sequence_record< field_types, field_ids >, seqan3::shape, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_record< field_types, field_ids >, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::value_list_validator< option_value_t >, seqan3::views::deep< underlying_adaptor_t >, seqan3::wuss< SIZE >
• operator==() : seqan3::aligned_allocator< value_t, alignment_v >, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::hamming_scoring_scheme, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• operator>() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator>=() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator>>() : input_stream_over, seqan3::dynamic_bitset< bit_capacity >
• operator>>=() : seqan3::dynamic_bitset< bit_capacity >
• operator[]() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::gap_decorator< inner_type >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::small_vector< value_type_, capacity_ >
• operator^() : enum_bitwise_operators
• operator^=() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >
• operator|() : enum_bitwise_operators, seqan3::configuration< configs_t >
• operator|=() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >
• operator~() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >
• option_declared_multiple_times() : seqan3::option_declared_multiple_times
• option_value_type() : validator
• output_alignment() : seqan3::align_cfg::output_alignment
• output_begin_position() : seqan3::align_cfg::output_begin_position
• output_directory_validator() : seqan3::output_directory_validator
• output_end_position() : seqan3::align_cfg::output_end_position
• output_file_validator() : seqan3::output_file_validator< file_t >
• output_index_cursor() : seqan3::search_cfg::output_index_cursor
• output_query_id() : seqan3::search_cfg::output_query_id
• output_reference_begin_position() : seqan3::search_cfg::output_reference_begin_position
• output_reference_id() : seqan3::search_cfg::output_reference_id
• output_score() : seqan3::align_cfg::output_score
• output_sequence1_id() : seqan3::align_cfg::output_sequence1_id
• output_sequence2_id() : seqan3::align_cfg::output_sequence2_id