Here is a list of all documented class members with links to the class documentation for each member:

- s -

• sam_file_header() : seqan3::sam_file_header< ref_ids_type >
• sam_file_input() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• sam_file_output() : seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
• sam_record() : seqan3::sam_record< field_types, field_ids >
• sam_require_header : seqan3::sam_file_output_options
• sam_tag_type_t : seqan3::sam_tag_type< tag_value >
• scheme : seqan3::align_cfg::scoring_scheme< scoring_scheme_t >
• score() : scoring_scheme_for, seqan3::align_cfg::min_score, seqan3::alignment_result< alignment_result_value_t >, seqan3::hamming_scoring_scheme, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• score_type() : scoring_scheme_for, seqan3::align_cfg::score_type< score_t >, seqan3::hamming_scoring_scheme, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• scoring_scheme() : seqan3::align_cfg::scoring_scheme< scoring_scheme_t >
• scoring_scheme_base() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• search_result() : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• selected_field_ids : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• semialphabet_any() : seqan3::semialphabet_any< size >
• sentinel : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• seq_alphabet : seqan3::structure_file_input_default_traits_aa, seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• seq_container : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• seq_legal_alphabet : seqan3::structure_file_input_default_traits_aa, seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• seq_type : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• sequence() : seqan3::sam_record< field_types, field_ids >, seqan3::sequence_record< field_types, field_ids >, seqan3::structure_record< field_types, field_ids >
• sequence1_begin_position() : seqan3::alignment_result< alignment_result_value_t >
• sequence1_end_position() : seqan3::alignment_result< alignment_result_value_t >
• sequence1_id() : seqan3::alignment_result< alignment_result_value_t >
• sequence2_begin_position() : seqan3::alignment_result< alignment_result_value_t >
• sequence2_end_position() : seqan3::alignment_result< alignment_result_value_t >
• sequence2_id() : seqan3::alignment_result< alignment_result_value_t >
• sequence_alphabet() : sam_file_input_traits, seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >, seqan3::sequence_file_input_default_traits_aa, seqan3::sequence_file_input_default_traits_dna, sequence_file_input_traits
• sequence_alphabet_type : seqan3::masked< sequence_alphabet_t >, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
• sequence_container() : sam_file_input_traits, seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >, seqan3::sequence_file_input_default_traits_dna, sequence_file_input_traits
• sequence_file_input() : seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• sequence_file_input_options_type : seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• sequence_file_output() : seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
• sequence_legal_alphabet() : sam_file_input_traits, seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >, seqan3::sequence_file_input_default_traits_aa, seqan3::sequence_file_input_default_traits_dna, sequence_file_input_traits
• sequence_position() : seqan3::sam_record< field_types, field_ids >
• sequence_record() : seqan3::sequence_record< field_types, field_ids >
• sequence_structure() : seqan3::structure_record< field_types, field_ids >
• sequence_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• set() : seqan3::dynamic_bitset< bit_capacity >
• set_custom_matrix() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• set_hamming_distance() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• set_similarity_matrix() : seqan3::aminoacid_scoring_scheme< score_type >
• set_simple_scheme() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• set_underlying_stream() : seqan3::debug_stream_type< char_t >
• setf() : seqan3::debug_stream_type< char_t >
• shape() : seqan3::shape
• short_copyright : seqan3::argument_parser_meta_data
• short_description : seqan3::argument_parser_meta_data
• shrink_to_fit() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
• size() : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::configuration< configs_t >, seqan3::dynamic_bitset< bit_capacity >, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::gap_decorator< inner_type >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::small_vector< value_type_, capacity_ >, seqan3::type_list< types >
• size_type : seqan3::aligned_allocator< value_t, alignment_v >, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::gap_decorator< inner_type >, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• small_string() : seqan3::small_string< capacity_ >
• small_vector() : seqan3::small_vector< value_type_, capacity_ >
• soft_back : seqan3::cigar_clipped_bases
• soft_front : seqan3::cigar_clipped_bases
• sorting : seqan3::sam_file_header< ref_ids_type >
• str() : seqan3::small_string< capacity_ >
• stratum : seqan3::search_cfg::hit_strata
• stream_char_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• structure_alphabet : seqan3::structure_file_input_default_traits_aa, seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• structure_alphabet_type : seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
• structure_container : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• structure_file_input() : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• structure_file_output() : seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• structure_record() : seqan3::structure_record< field_types, field_ids >
• structure_type : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• structured_aa() : seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
• structured_rna() : seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
• structured_seq_alphabet : seqan3::structure_file_input_default_traits_aa, seqan3::structure_file_input_default_traits_rna
• structured_seq_container : seqan3::structure_file_input_default_traits_rna
• structured_seq_type : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• subsorting : seqan3::sam_file_header< ref_ids_type >
• suffix_array_interval() : seqan3::fm_index_cursor< index_t >
• swap() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
• synopsis : seqan3::argument_parser_meta_data